picard.analysis.artifacts.SequencingArtifactMetrics

public class SequencingArtifactMetrics extends Object

Nested Class Summary

Nested Classes

Modifier and Type

Class

Description

static class

SequencingArtifactMetrics.BaitBiasDetailMetrics

Bait bias artifacts broken down by context.

static class

SequencingArtifactMetrics.BaitBiasSummaryMetrics

Summary analysis of a single bait bias artifact, also known as a reference bias artifact.

static class

SequencingArtifactMetrics.PreAdapterDetailMetrics

Pre-adapter artifacts broken down by context.

static class

SequencingArtifactMetrics.PreAdapterSummaryMetrics

Summary analysis of a single pre-adapter artifact.
Field Summary

Fields

Modifier and Type

Field

Description

static final String

BAIT_BIAS_DETAILS_EXT

static final String

BAIT_BIAS_SUMMARY_EXT

static final String

ERROR_SUMMARY_EXT

static final String

PRE_ADAPTER_DETAILS_EXT

static final String

PRE_ADAPTER_SUMMARY_EXT
Constructor Summary

Constructors

Constructor

Description

SequencingArtifactMetrics()
Method Summary

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- PRE_ADAPTER_SUMMARY_EXT
  
  public static final String PRE_ADAPTER_SUMMARY_EXT
  See Also:
  
  Constant Field Values
- PRE_ADAPTER_DETAILS_EXT
  
  public static final String PRE_ADAPTER_DETAILS_EXT
  See Also:
  
  Constant Field Values
- BAIT_BIAS_SUMMARY_EXT
  
  public static final String BAIT_BIAS_SUMMARY_EXT
  See Also:
  
  Constant Field Values
- BAIT_BIAS_DETAILS_EXT
  
  public static final String BAIT_BIAS_DETAILS_EXT
  See Also:
  
  Constant Field Values
- ERROR_SUMMARY_EXT
  
  public static final String ERROR_SUMMARY_EXT
  See Also:
  
  Constant Field Values
Constructor Details
- SequencingArtifactMetrics
  
  public SequencingArtifactMetrics()

Class SequencingArtifactMetrics

Nested Class Summary