Package picard.filter

Class CountingFilterWrapper

java.lang.Object
picard.filter.CountingFilter
picard.filter.CountingFilterWrapper
All Implemented Interfaces:
htsjdk.samtools.filter.SamRecordFilter
public class CountingFilterWrapper extends CountingFilter
A CountingFilter that wraps any SamRecordFilter and provides a count of the reads and bases filtered

  • Constructor Details

    • CountingFilterWrapper

      public CountingFilterWrapper(htsjdk.samtools.filter.SamRecordFilter wrappedFilter)

  • Method Details

    • reallyFilterOut

      public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record)
      Description copied from class: CountingFilter
      Return true if we are to filter this record out, false otherwise.
      Specified by:
      reallyFilterOut in class CountingFilter