Package picard.fingerprint
Class FingerprintUtils.VariantContextSet
java.lang.Object
java.util.AbstractCollection<htsjdk.variant.variantcontext.VariantContext>
java.util.AbstractSet<htsjdk.variant.variantcontext.VariantContext>
java.util.TreeSet<htsjdk.variant.variantcontext.VariantContext>
picard.fingerprint.FingerprintUtils.VariantContextSet
- All Implemented Interfaces:
Serializable,Cloneable,Iterable<htsjdk.variant.variantcontext.VariantContext>,Collection<htsjdk.variant.variantcontext.VariantContext>,NavigableSet<htsjdk.variant.variantcontext.VariantContext>,SequencedCollection<htsjdk.variant.variantcontext.VariantContext>,SequencedSet<htsjdk.variant.variantcontext.VariantContext>,Set<htsjdk.variant.variantcontext.VariantContext>,SortedSet<htsjdk.variant.variantcontext.VariantContext>
- Enclosing class:
FingerprintUtils
public static class FingerprintUtils.VariantContextSet
extends TreeSet<htsjdk.variant.variantcontext.VariantContext>
A class that holds VariantContexts sorted by genomic position
- See Also:
-
Method Summary
Methods inherited from class java.util.TreeSet
add, addAll, addFirst, addLast, ceiling, clear, clone, comparator, contains, descendingIterator, descendingSet, first, floor, headSet, headSet, higher, isEmpty, iterator, last, lower, pollFirst, pollLast, remove, size, spliterator, subSet, subSet, tailSet, tailSetMethods inherited from class java.util.AbstractSet
equals, hashCode, removeAllMethods inherited from class java.util.AbstractCollection
containsAll, retainAll, toArray, toArray, toStringMethods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, waitMethods inherited from interface java.util.Collection
parallelStream, removeIf, stream, toArrayMethods inherited from interface java.util.NavigableSet
removeFirst, removeLast, reversed