FileFaker (picard 3.4.0 API)

java.lang.Object

picard.illumina.parser.fakers.FileFaker

Direct Known Subclasses:: BarcodeFileFaker, BciFileFaker, BclFileFaker, BclIndexFaker, ClocsFileFaker, FilterFileFaker, LocsFileFaker, MultiTileBclFileFaker, MultiTileLocsFileFaker, PosFileFaker

public abstract class FileFaker extends Object

Constructor Summary

Constructors

Constructor

Description

FileFaker()
Method Summary

Modifier and Type

Method

Description

protected abstract boolean

addLeadingZeros()

protected abstract int

bufferSize()

void

fakeFile(File base, int tile, int lane, String extension)

void

fakeFile(File cycleFile, Integer size)

void

fakeFile(File base, List<Integer> expectedTiles, int lane, String extension)

protected abstract void

fakeFile(ByteBuffer buffer)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- FileFaker
  
  public FileFaker()
Method Details
- fakeFile
  
  protected abstract void fakeFile(ByteBuffer buffer)
- addLeadingZeros
  
  protected abstract boolean addLeadingZeros()
- bufferSize
  
  protected abstract int bufferSize()
- fakeFile
  
  public void fakeFile(File base, int tile, int lane, String extension) throws IOException
  
  Throws:
  
  IOException
- fakeFile
  
  public void fakeFile(File base, List<Integer> expectedTiles, int lane, String extension) throws IOException
  
  Throws:
  
  IOException
- fakeFile
  
  public void fakeFile(File cycleFile, Integer size) throws IOException
  
  Throws:
  
  IOException