Package picard.illumina.parser.readers

Class BarcodeFileReader

java.lang.Object
picard.illumina.parser.readers.BarcodeFileReader
All Implemented Interfaces:
htsjdk.samtools.util.CloseableIterator<String>, Closeable, AutoCloseable, Iterator<String>
public class BarcodeFileReader extends Object implements htsjdk.samtools.util.CloseableIterator<String>
Reads a single barcode file line by line and returns the barcode if there was a match or NULL otherwise. Barcode.txt file Format (consists of tab delimited columns, 1 record per row) sequence_read Matched(Y/N) BarcodeSequenceMatched sequence read - the actual bases at barcode position Matched(y/n) - Y or N indicating if there was a barcode match BarcodeSequenceMatched - matched barcode sequence (empty if read did not match one of the barcodes).

  • Constructor Details

    • BarcodeFileReader

      public BarcodeFileReader(File barcodeFile)

  • Method Details