BaseErrorCalculator (picard 3.4.0 API)

java.lang.Object

picard.sam.SamErrorMetric.BaseErrorCalculator

All Implemented Interfaces:: BaseCalculator

Direct Known Subclasses:: IndelErrorCalculator, OverlappingReadsErrorCalculator, SimpleErrorCalculator

public abstract class BaseErrorCalculator extends Object implements BaseCalculator

Constructor Summary

Constructors

Constructor

Description

BaseErrorCalculator()
Method Summary

Modifier and Type

Method

Description

void

addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)

the function by which new loci are "shown" to the calculator

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface picard.sam.SamErrorMetric.BaseCalculator
getMetric, getSuffix

Constructor Details
- BaseErrorCalculator
  
  public BaseErrorCalculator()
Method Details
- addBase
  
  public void addBase(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusAndRef)
  
  the function by which new loci are "shown" to the calculator
  
  Specified by:
  
  addBase in interface BaseCalculator