picard.sam.markduplicates.util.PhysicalLocationForMateCigar

public class PhysicalLocationForMateCigar extends PhysicalLocationShort

Stores the minimal information needed for optical duplicate detection.

See Also:

Constructor Details
- PhysicalLocationForMateCigar
  
  public PhysicalLocationForMateCigar(PhysicalLocation rec)
Method Details
- getReadGroup
  
  public short getReadGroup()
  
  Specified by:
  
  getReadGroup in interface PhysicalLocation
  
  Overrides:
  
  getReadGroup in class PhysicalLocationInt
- setReadGroup
  
  public void setReadGroup(short rg)
  
  Specified by:
  
  setReadGroup in interface PhysicalLocation
  
  Overrides:
  
  setReadGroup in class PhysicalLocationInt
- getLibraryId
  
  public short getLibraryId()
  
  Specified by:
  
  getLibraryId in interface PhysicalLocation
  
  Overrides:
  
  getLibraryId in class PhysicalLocationInt
- setLibraryId
  
  public void setLibraryId(short libraryId)
  
  Specified by:
  
  setLibraryId in interface PhysicalLocation
  
  Overrides:
  
  setLibraryId in class PhysicalLocationInt
- equals
  
  public boolean equals(Object other)
  
  Overrides:
  
  equals in class Object
- hashCode
  
  public int hashCode()
  
  Overrides:
  
  hashCode in class Object

Class PhysicalLocationForMateCigar

Field Summary