picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesWithBarcodesCodec

All Implemented Interfaces:: htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>, Cloneable

public class ReadEndsForMarkDuplicatesWithBarcodesCodec extends ReadEndsForMarkDuplicatesCodec

Created by nhomer on 9/13/15.

Field Summary

Fields inherited from class picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesCodec
in, out
Constructor Summary

Constructors

Constructor

Description

ReadEndsForMarkDuplicatesWithBarcodesCodec()
Method Summary

Modifier and Type

Method

Description

htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>

clone()

ReadEndsForMarkDuplicates

decode()

void

encode(ReadEndsForMarkDuplicates read)

Methods inherited from class picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesCodec
getInputStream, getOutputStream, setInputStream, setOutputStream

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- ReadEndsForMarkDuplicatesWithBarcodesCodec
  
  public ReadEndsForMarkDuplicatesWithBarcodesCodec()
Method Details
- clone
  
  public htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates> clone()
  
  Specified by:
  
  clone in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
  
  Overrides:
  
  clone in class ReadEndsForMarkDuplicatesCodec
- encode
  
  public void encode(ReadEndsForMarkDuplicates read)
  
  Specified by:
  
  encode in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
  
  Overrides:
  
  encode in class ReadEndsForMarkDuplicatesCodec
- decode
  
  public ReadEndsForMarkDuplicates decode()
  
  Specified by:
  
  decode in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
  
  Overrides:
  
  decode in class ReadEndsForMarkDuplicatesCodec

Class ReadEndsForMarkDuplicatesWithBarcodesCodec

Field Summary