Package picard.util

Class SequenceDictionaryUtils.SamSequenceRecordsIterator

java.lang.Object
picard.util.SequenceDictionaryUtils.SamSequenceRecordsIterator
All Implemented Interfaces:
Iterator<htsjdk.samtools.SAMSequenceRecord>
Enclosing class:
SequenceDictionaryUtils
public static class SequenceDictionaryUtils.SamSequenceRecordsIterator extends Object implements Iterator<htsjdk.samtools.SAMSequenceRecord>

  • Constructor Details

    • SamSequenceRecordsIterator

      public SamSequenceRecordsIterator(Path referenceSequence, boolean truncateNamesAtWhitespace)

  • Method Details

    • setGenomeAssembly

      public void setGenomeAssembly(String genomeAssembly)

    • setUri

      public void setUri(String uri)

    • setSpecies

      public void setSpecies(String species)

    • hasNext

      public boolean hasNext()
      Specified by:
      hasNext in interface Iterator<htsjdk.samtools.SAMSequenceRecord>

    • next

      public htsjdk.samtools.SAMSequenceRecord next()
      Specified by:
      next in interface Iterator<htsjdk.samtools.SAMSequenceRecord>