picard.vcf.processor.VcfPathSegmentGenerator

public abstract class VcfPathSegmentGenerator extends Object

Describes a mechanism for producing VcfPathSegments from a VCF file path.

Constructor Details
- VcfPathSegmentGenerator
  
  public VcfPathSegmentGenerator()
Method Details
- forVcf
  
  public abstract Iterable<VcfPathSegment> forVcf(PicardHtsPath vcf)
- byWholeContigSubdividingWithWidth
  
  public static VcfPathSegmentGenerator byWholeContigSubdividingWithWidth(long segmentWidth)
- excludingNonOverlaps
  
  public static <T> VcfPathSegmentGenerator excludingNonOverlaps(VcfPathSegmentGenerator strategy, htsjdk.samtools.util.OverlapDetector<T> overlaps)
  
  Returns a decorated VcfPathSegmentGenerator that filters out VcfPathSegments that have no overlap with the provided OverlapDetector.

Class VcfPathSegmentGenerator

Constructor Summary